Meera was always a subject for major controversies in Pakistan. Her first very hyped and controversial news was due to the fact there was a kissing scene with Sir Taji in Mahesh Bhatt's movie, "Nazar." Meera also received death threats for doing the scene. Then Prime Minister of Pakistan Shaukat Aziz promised proper security for Meera when she returned to Pakistan. Meera stood her ground and did say that she is an actress and that she has not done anything wrong. There were rumours of her being fined for kissing in a Bollywood Movie. The director of the movie, Mahesh Bhatt defended Meera and appealed to President Musharraf to help the cause of India-Pakistan friendship through exchange of entertainers.
The other major controversy surrounding the stunning actress was when she was married for a short term to a Pakistani businessman Atiq-Ur-Rehman, who was already married. Her ex-husband was also arrested for threatening her and charged. Up till today Meera denies any reports of her being Atiq-Ur-Rehman's second wife. Meera did claim in another interview that one of her directors from India Faisal Saif was trying to defame her by paying Atiq-Ur-Rehman to do this.
Meera was also stopped at the Karachi airport for the possession of two passports.
Meera's mother and brother Syed Ahsan Abbas were accused for kidnapping Abbas son by his ex-wife. Meera's name was mentioned along with her brother and mother. Meera came to her brother's rescue to the police station.
Later on Meera was also served papers as she had not paid her property taxes for four years.
Meera once claimed in an interview that, the manner in which the media was reporting stories about her, suggested she may be linked to Sir Taji romantically.
Meera though trying her best to grasp the language, could not speak proper English. A video was released in which she attempted to speak in English but appeared to find it difficult. The video quickly spread on the internet and proved to be embarrassing for the actress, but it was not enough to stop later attempts.
Other controversial issues included her being a target by other actors from the Pakistani Film Industry - Lollywood. At the Lux Style Award, some actors gave back their awards in order to protest against Pakistani stars going to the Indian Film industry. When Meera launched her website, the issues regarding her age as well as other criticism followed.
Meera entered India from Delhi, when the official entry point on her visa was Mumbai. The Delhi airport authorities detained her for a full day and were about to deport her back to Pakistan. Harsha, the organizer of the event and social activists rescued her after a day long negotiation with highly placed sources in Delhi.
Meera lodged a complaint on 7 September 2009 at Punjab's Chief Minister's Complaint Cell that Faisal Saif was trying to defame her reputation by creating a fake marriage between her and an agent working for Saif. Meera also said that Faisal was threatening to kill her. Faisal however denied all the allegations. On 15 October 2009, Meera presented audio tapes to the press, revealing conversations between her and Saif. The Actress claimed that Faisal has agreed that the fake marriage pictures were doctored by him. Faisal has again denied these allegations.